Publications

2021

Jouanneau, D., Hanbidge, A., Cascella, K and Potin, P. (2021). Biorefinery Manual: Benefits and Sustainability of Seaweed Biorefinery. Zenodo.

Jouanneau, D., Klau, L. J., Larocque, R., Jaffrennou, A., Duval, G., le Duff, N., Roret, T., Jeudy, A., Aachmann, F. L., Czjzek, M. and Thomas, F. (2021). Structure–function analysis of a new PL17 oligoalginate lyase from the marine bacterium Zobellia galactanivorans DsijT. Glycobiology.

DOI: https://doi.org/10.1093/glycob/cwab058

Selnes, T., Giesbers, E. and van den Burg, S.W.K. (2021). Innovation and Collaboration: Opportunities for the European Seaweed Sector in Global Value Chains. Journal of Marine Science and Engineering 9, no. 7:693.

DOI: https://doi.org/10.3390/jmse9070693

Fort, A., McHale, M., Cascella, K., Potin, P., Perrineau, M., Kerrison, P. D., Costa, E., Calado, R., Domingues, M. D. R., Costa Azevedo, I., Sousa‐Pinto, I., Gachon, C., Werf, A., Visser, W., Beniers, J. E., Jansen, H., Guiry, M. D., & Sulpice, R. (2021). Exhaustive reanalysis of barcode sequences from public repositories highlights ongoing misidentifications and impacts taxa diversity and distribution. Molecular Ecology Resources. Published.

DOI: https://doi.org/10.1111/1755-0998.13453

Repository link

Fort, A., Linderhof, C., Coca-Tagarro, I., Inaba, M., McHale, M., Cascella, K., Potin, P., Guiry, M. D., & Sulpice, R. (2021). A sequencing-free assay for foliose Ulva species identification, hybrid detection and bulk biomass characterisation. Algal Research, 55, 102280.

DOI: https://doi.org/10.1016/j.algal.2021.102280

Repository link

Martins, M., de Souza Mesquita, L. M., Vaz, B. M.C., Dias, A.C.R.V.,  Torres-Acosta, M. A., Quéguineur, B., Coutinho, J.A.P. and Ventura, S.P.M. (2021). Extraction and Fractionation of Pigments from Saccharina latissima (Linnaeus, 2006) Using an Ionic Liquid + Oil + Water System. ACS Sustainable Chemistry & Engineering, 9 (19) 6599–6612.

DOI: https://doi.org/10.1021/acssuschemeng.0c09110

The Supplementary Cover Art for the manuscript published in ACS Sustainable Chemistry & Engineering

Moreira, A. S. P., da Costa, E., Melo, T., Lopes, D., Pais, A. C. S., Santos, S. A. O., Pitarma, B., Mendes, M., Abreu, M. H., Collén, P. N., Domingues, P., and Domingues, M. R. (2021). Polar Lipids of Commercial Ulva of Different Origins: Profiling and Relevance for Seaweed Valorization. Foods, 10(5), 914.

DOI: https://doi.org/10.3390/foods10050914

Researcher Poster Communication | Ana S. P, Moreira | Comparison of lipidomic signatures in commercial Ulva spp. of different origin won Best Researcher Poster at Lipids in the Oceans Conference 2021

Solvang, T., Bale, E.S., Broch, O.J., Handå, A. and Alver, M.O. (2021). Automation Concepts for Industrial-Scale Production of Seaweed. Frontiers in Marine Science 8:613093.

DOI: https://doi.org/10.3389/fmars.2021.613093

Lopes, D., Melo, T., Rey, F., Costa, E., Moreira, A. S., Abreu, M. H., Domingues, P., Lillebø, A. I., Calado, R., & Rosário Domingues, M. (2021). Insights of species-specific polar lipidome signatures of seaweeds fostering their valorization in the blue bioeconomy. Algal Research, 55, 102242.

DOI: https://doi.org/10.1016/j.algal.2021.102242

Monteiro, J. P., Melo, T., Skjermo, J., Forbord, S., Broch, O. J., Domingues, P., Calado, R., and Domingues, M. R. (2021). Effect of harvesting month and proximity to fish farm sea cages on the lipid profile of cultivated Saccharina latissima. Algal Research, 54, 102201.

DOI: https://doi.org/10.1016/j.algal.2021.102201

Repository link 

Xing, Q., Rousvoal, S. and Leblanc, C. (2021). Transcriptome-wide identification and evaluation of optimal reference genes for RT-qPCR expression analysis of Saccharina latissima responses to biotic and abiotic stress. Journal of Applied Phycology 33, 617–627.

DOI: https://doi.org/10.1007/s10811-020-02279-x

Repository link

2020

Pagels, F., Salvaterra, D., Amaro, H.M. et al. (2020). Bioactive potential of Cyanobium sp. pigment-rich extracts. Journal of Applied Phycology 32, 3031–3040.

DOI: https://doi.org/10.1007/s10811-020-02213-1

Murúa, P., Müller, D. G., Etemadi, M., West, P., & Gachon, C. M. M. (2020). Host and pathogen autophagy are central to the inducible local defences and systemic response of the giant kelp Macrocystis pyrifera against the oomycete pathogen Anisolpidium ectocarpii. New Phytologist, 226(5), 1445–1460.

DOI: https://doi.org/10.1111/nph.16438

Jiang, L., Gerkema, T., Kromkamp, J. C., van der Wal, D., Carrasco De La Cruz, P. M., & Soetaert, K. (2020). Drivers of the spatial phytoplankton gradient in estuarine–coastal systems: generic implications of a case study in a Dutch tidal bay. Biogeosciences, 17 (16), 4135–4152.

DOI: https://doi.org/10.5194/bg-17-4135-2020

Publication link

Moreira, A. S. P., da Costa, E., Melo, T., Sulpice, R., Cardoso, S. M., Pitarma, B., Pereira, R., Abreu, M. H., Domingues, P., Calado, R., & Domingues, M. R. (2020). Seasonal plasticity of the polar lipidome of Ulva rigida cultivated in a sustainable integrated multi-trophic aquaculture. Algal Research, 49, 101958.

DOI: https://doi.org/10.1016/j.algal.2020.101958

Calmes, B., Strittmatter, M., Jacquemin, B., Perrineau, M.-M., Rousseau, C., Badis, Y., Cock, J. M., Destombe, C., Valero, M., & Gachon, C. M. M. (2020). Parallelisable non-invasive biomass, fitness and growth measurement of macroalgae and other protists with nephelometry. Algal Research, 46, 101762.

DOI: https://doi.org/10.1016/j.algal.2019.101762

Repository link 1

Repository link 2

van den Burg, S., Selnes, T., Alves, L., Giesbers, E., and  Daniel, A. (2020). Prospects for upgrading by the European kelp sector. Journal of Applied Phycology

DOI: https://doi.org/10.1007/s10811-020-02320-z

Guzinski, J., Ruggeri, P., Ballenghien, M., Mauger, S., Jacquemin, B., Jollivet, C., Coudret, J., Jaugeon, L., Destombe, C. and Valero, M. (2020). Seascape Genomics of the Sugar Kelp Saccharina latissima Along the North Eastern Atlantic Latitudinal Gradient. Genes 11, no. 12: 1503.

DOI: https://doi.org/10.3390/genes11121503

Fort, A., McHale, M., Cascella, K., Potin, P., Usadel, B., Guiry, M. and Sulpice, R. (2020). Foliose Ulva species show considerable inter‐specific genetic diversity, low intra‐specific genetic variation, and the rare occurrence of inter‐specific hybrids in the wild. Journal of Phycology. Accepted Author Manuscript.

DOI: https://doi.org/10.1111/jpy.13079

Repository link

Pruteanu, L., Kopanitsa, L., Módos, D., Kletnieks, E., Samarova, E., Bender, A., Gomez, L. and Bailey, D. (2020). Transcriptomics predicts compound synergy in drug and natural product treated glioblastoma cells. PLOS ONE, 15(9), p.e0239551.

DOI: https://doi.org/10.1371/journal.pone.0239551

Martins, M., Fernandes, A., Torres-Acosta, M., Collén, P., Abreu, M. and Ventura, S. (2020). Extraction of chlorophyll from wild and farmed Ulva spp. using aqueous solutions of ionic liquids. Separation and Purification Technology, 254, p.117589.

DOI: https://doi.org/10.1016/j.seppur.2020.117589

Publication link

Repository link

Da Costa, E; Ricardo, F; Melo, T; Mamede, R; Abreu, Maria H.; Domingues, P; Domingues, M. Rosário; and Calado, R. (2020). Site-Specific lipidomic signatures of sea lettuce (Ulva spp., Chlorophyta) hold the potential to trace their geographic origin, Biomolecules 10, 489.

DOI: https://doi.org/10.3390/biom10030489

Repository Link

Monteiro, J.P, Rey, F., Melo, T., Moreira, A., Arbona, J-F., Skjermo, J., Forbord, S., Funderud, J., Raposo, D., Kerrison, P., Perrineau, M-M., Gachon, C., Domingues, P., Calado  R. and Domingues, M. R. (2020). The Unique Lipidomic Signatures of Saccharina latissima Can Be Used to Pinpoint Their Geographic Origin. Biomolecules, 10(1), p.107.

DOI: https://doi.org/10.3390/biom10010107

Repository Link

2019

Viborg, A. H., Terrapon, N., Lombard, V., Michel, G., Czjzek, M., Henrissat, B., & Brumer, H. (2019). A subfamily roadmap of the evolutionarily diverse glycoside hydrolase family 16 (GH16). Journal of Biological Chemistry, 294(44), 15973–15986.

DOI: https://doi.org/10.1074/jbc.ra119.010619

Garvetto, A., Perrineau, M., Dressler‐Allame, M., Bresnan, E. and Gachon, C.. (2019). “Ectrogella” Parasitoids of the Diatom Licmophora sp. are Polyphyletic. Journal of Eukaryotic Microbiology, 67(1), pp.18-27.

DOI: https://doi.org/10.1111/jeu.12750

Repository link

Visch, W., Rad-Menéndez, C., Nylund, G., Pavia, H., Ryan, M. and Day, J. (2019). Underpinning the Development of Seaweed Biotechnology: Cryopreservation of Brown Algae (Saccharina latissima) Gametophytes. In: Biopreservation and Biobanking, 378-386.

DOI: https://doi.org/10.1089/bio.2018.0147

Bringslid, I.H. (2019). Phosphorus in Saccharina latissima: Initial uptake, storage, and possibilities for recycling in IMTA systems. (Unpublished Master’s thesis) NTNU Norwegian University of Science and Technology, Trondheim, Norway.

DOI: http://dx.doi.org/10.5281/zenodo.3751548 

Repository Link

van den Burg, S., Dagevos, H. and Helmes, R. (2019). Towards sustainable European seaweed value chains: a triple P perspective. ICES Journal of Marine Science fsz183.

DOI: https://doi.org/10.1093/icesjms/fsz183

Rey, F., Lopes, D., Maciel, E., Monteiro, J., Skjermo, J., Funderud, J., Raposo, D., Domingues, P., Calado, R. and Domingues, M. (2019). Polar lipid profile of Saccharina latissima, a functional food from the sea. Algal Research, 39, p.101473.

DOI: https://doi.org/10.1016/j.algal.2019.101473

Repository Link 

Fort, A., Mannion, C., Fariñas-Franco, J.M. and Sulpice, R. (2019). Green tides select for fast expanding Ulva strains. Science of the Total Environment, 698, 134337.

DOI: 10.1016/j.scitotenv.2019.134337

Bernard, M., Rousvoal, S., Collet, N., Le Goff, T., Jacquemin, B., Peters, A., Potin, P. and Leblanc, C. (2019). A highly prevalent filamentous algal endophyte in natural populations of the sugar kelp Saccharina latissima is not detected during cultivation in Northern Brittany. Aquatic Living Resources, vol. 32, 2019, p. 21.

DOI: 10.1051/alr/2019019

Fort, A., Lebrault, M., Allaire, M., Esteves-Ferreira, A., McHale, M., Lopez, F., Fariñas-Franco, J.M, Alseekh, S., Fernie, A. and Sulpice, R. (2019). Extensive variations in diurnal growth patterns and metabolism amongst Ulva spp strains. Plant Physiology, pp.18.01513.

DOI: 10.1104/pp.18.01513 

2018

Lopes, D., Moreira, A.S.P., Rey, F., da Costa, E., Melo, T., Maciel, E., Rego, A., Abreu, M.H., Domingues, P., Calado, R., Lillebø, A.I. and Domingues, R.M. (2018). Lipidomic signature of the green macroalgae Ulva rigida farmed in a sustainable integrated multi-trophic aquaculture. Journal of Applied Phycology, 31(2), pp.1369–1381.

DOI: 10.1007/s10811-018-1644-6 

Repository Link

Fort, A., Guiry, M.D. and Sulpice, R. (2018). Magnetic beads, a particularly effective novel method for extraction of NGS-ready DNA from macroalgae. Algal Research, 32, pp.308–313.

DOI: 10.1016/j.algal.2018.04.015

Repository Link